YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARNC_SALPK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDAAPIKKV SVVIPVYNEQ ESLPELIRRT TAACESLGKA WEILLIDDGS SDSSAELMVK  60
   61 ASQEADSHII SILLNRNYGQ HAAIMAGFSH VSGDLIITLD ADLQNPPEEI PRLVAKADEG 120
  121 FDVVGTVRQN RQDSLFRKSA SKIINLLIQR TTGKAMGDYG CMLRAYRRPI IDTMLRCHER 180
  181 STFIPILANI FARRATEIPV HHAEREFGDS KYSFMRLINL MYDLVTCLTT TPLRLLSLLG 240
  241 SVIAIGGFSL SVLLIVLRLA LGPQWAAEGV FMLFAVLFTF IGAQFIGMGL LGEYIGRIYN 300
  301 DVRARPRYFV QQVIYPESTS FTEESHQ

Type	Start	End	Confidence
Cytoplasmic	1	237	0.71
Transmembrane Helix	238	261	0.88
Non-Cytoplasmic	262	269	0.55
Transmembrane Helix	270	295	0.81
Cytoplasmic	296	327	0.66