YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|237789068, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDIIILVVI GGAFGAMTRE FIMLMVPPLT DGFPLDILVA NVVACFLLGT VTALYARKIH  60
   61 SRDVHTIIGT GMMGGVSTFS SFAYGSVVLA SASMSAFLIA AAYVTVSVVA GYVAVLAGMK 120
  121 FGEKSADILH RYPPMASIID SGLVTVESRH SVAETIERVA AKAKSMGMNV FTRVDHGAGA 180
  181 KEAGLGLPPT ELIIFGNPQN GTVLMQDKRT IGLDLPIRAL AWEDGSGKVW LTVNDPAWLA 240
  241 QRHSLGLSSD VAIKAMVTGT GTVTKYAAGD

Type	Start	End	Confidence
Cytoplasmic	1	4	0.89
Transmembrane Helix	5	26	0.85
Non-Cytoplasmic	27	36	0.72
Transmembrane Helix	37	56	0.96
Cytoplasmic	57	65	0.85
Transmembrane Helix	66	87	0.91
Non-Cytoplasmic	88	95	0.73
Transmembrane Helix	96	116	0.93
Cytoplasmic	117	270	0.96