YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DXR_COLP3
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRQLCILG STGSIGCSTL DVVRLHPERF QVISLAAYTS VDVIFEQCIE FKPQQVVLVS  60
   61 SEHAALLTQK LNDANVSNIT VLSGEQALID IAECQNSDTV MASIVGASGL LPTLAAVNAG 120
  121 KRVLLANKEA LVTSGAIFMA AVKASGAELL PIDSEHNAIF QCLPSQQQAE IGECQLLANG 180
  181 ISKILLTGSG GPFRTRAIDT LESVTPSQAC AHPNWDMGRK ISVDSATMMN KGLEFIEAKW 240
  241 LFNVEAEDIQ VVLHPQSTIH SMVQYKDGSV IAQMGNPDMR TPIAHALSFP ERIESGVAPL 300
  301 DFFNTPSFEF QPVDFERYPN LELAIEACKQ GQAACTALNA ANEIAVAAFL DEKIKFTDIY 360
  361 KINETSVKKF VSQKVDNINE VIALDEQARS FAQTLLADFL QTEALSQKGN K

Type	Start	End	Confidence
Signal Peptide	1	19	0.83
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	411	0.99