YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NFIP1_XENTR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQSSSRYQ QLQNEEEPGE NPQASTDAPP PYSSIAGESS GLFDYKDELG FPKPPSYNVA  60
   61 TSLPSYDEAE RTKAEATIPL VPGRDDDFVA RDDFDDADQL RIGNDGIFML TFFMAFLFNW 120
  121 IGFFLSFCLT SSAAGRYGAI SGFGLSLIKW ILIVRFSTYF PGYFDGQYWL WWVFLVLGFL 180
  181 LFLRGFINYA KVRKMPDNFS TLPRTRVLFI Y

Type	Start	End	Confidence
Non-Cytoplasmic	1	106	0.59
Transmembrane Helix	107	129	0.85
Cytoplasmic	130	136	0.45
Transmembrane Helix	137	153	0.66
Non-Cytoplasmic	154	167	0.75
Transmembrane Helix	168	187	0.95
Cytoplasmic	188	211	0.89