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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PECA1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLALLLTML LYASLQAQEN SFTINSIHME SRPSWEVSNG QKLTLQCLVD ISTTSKSRPQ  60
   61 HQVLFYKDDA LVYNVSSSEH TESFVIPQSR VFHAGKYKCT VILNSKEKTT IEYQLTVNGV 120
  121 PMPEVTVDKK EVTEGGIVTV NCSMQEEKPP IYFKIEKVEL GTKNVKLSRE KTSNMNFVLI 180
  181 EFPIEEQDHL LVFRCQAGVL SGIKMQTSEF IRSEYVTVQE FFSTPKFQIQ PPEMIIEGNQ 240
  241 LHIKCSVQVA HLAQEFPEII IQKDKAIVAT SKQSKEAVYS VMALVEHSGH YTCKVESNRI 300
  301 SKASSILVNI TELFPRPKLE LSSSRLDQGE MLDLSCSVSG APVANFTIQK EETVLSQYQN 360
  361 FSKIAEERDS GLYSCTAGIG KVVKRSNLVP VQVCEMLSKP RIFHDAKFEI IKGQIIGISC 420
  421 QSVNGTAPIT YRLLRAKSNF QTVQKNSNDP VTFTDKPTRD MEYQCIVDNC HSHPEVRSEI 480
  481 LRVKVIAPVD EVTISILSGN DVQSGDEMVL RCSVKEGTGP VTFQFYKEKE GRPFHEETVN 540
  541 DTQVFWHHEQ TSKEQEGQYY CTAFNRASIV TSLRSGPLTV RVFLAPWKKG LIAVVVIGVV 600
  601 IAALIVAAKY YFLRKAKAKQ KPVEMSRPAV PLLNSNSEKV SEPSVETNSH YDSQNMDVEY 660
  661 TEVEVSSLEP HQENGRLP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle