YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RT35_BOVIN
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPSLPAWL ALQTRARTLR AFSTAVSPVT GAQRLSPPTT ERTSKHERAP RRKALPPRTE  60
   61 KMSVDQDWPS VYPVAAPFKP SAVPLPVRMG YPVKRGVPMA KEGNLELLKI PNFLHLTPVA 120
  121 IKKHCEALKD FCTEWPAALD SDEKCEKHFP IEIDTADYIS SGPSIRNPKA RVVTLRVKLS 180
  181 SLNLDDHAKK KLIKLVGDRY CKSTDVLTIK TDRCPLKRQN YDYAMYLLTV LYHESWKTEE 240
  241 WEKKKTEADM EEYVWKDSAS EKNILETLFQ IKAAEKNTEL SKEELLSTKE VEDYKNSVVS 300
  301 LKNEGDNENT ISQYKESVKR LLHLM

Type	Start	End	Confidence
Signal Peptide	1	18	0.87
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	325	0.98