YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VSR6_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG  60
   61 YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC YFALKVWNGQ QSGVAAVLVA 120
  121 DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES 180
  181 LPHPDERVEY ELWTNTNDEC GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK 240
  241 DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW 300
  301 DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV 360
  361 GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE RTEPGICLSG DIETNECLEA 420
  421 NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE 480
  481 TKKGLTFSAC SNLETSGCRC PPGFKGDGLK CEACQCDGCN CKNKWGGFEC KCSGNRLYMK 540
  541 EQDTCIERSG SRIGWFPTFV ILAAVASICV GGYVFYKYRL RSYMDSEIMA IMSQYMPLES 600
  601 QNTTDPMTGE SQHQQLRLTS AA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle