YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ZMPB_STRPN
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.38
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKDRFSIR KIKGVVGSVF LGSLLMAPSV VDAATYHYVN KEIISQEAKD LIQTGKPDRN  60
   61 EVVYGLVYQK DQLPQTGTEA SVLTAFGLLT VGSLLLIYKR KKIASVFLVG AMGLVVLPSA 120
  121 GAVDPVATLA LASREGVVEM EGYRYVGYLS GDILKTLGLD TVLEETSAKP GEVTVVEVET 180
  181 PQSITNQEQA RTENQVVETE EAPKEEAPKT EESPKEEPKS EVKPTDDTLP KVEEGKEDSA 240
  241 EPAPVEEVGG EVESKPEEKV AVKPESQPSD KPAEESKVEQ AGEPVAPRED EKAPVEPEKQ 300
  301 PEAPEEEKAV EETPKQEEST PDTKAEETVE PKEETVNQSI EQPKVETPAV EKQTEPTEEP 360
  361 KVEQAGEPVA PREDEQAPTA PVEPEKQPEV PEEEKAVEET PKPEDKIKGI GTKEPVDKSE 420
  421 LNNQIDKASS VSPTDYSTAS YNALGPVLET AKGVYASEPV KQPEVNSETN KLKTAIDALN 480
  481 VDKTELNNTI ADAKTKVKEH YSDRSWQNLQ TEVTKAEKVA ANTDAKQSEV NEAVEKLTAT 540
  541 IEKLVELSEK PILTLTSTDK KILEREAVAK YTLENQNKTK IKSITAELKK GEEVINTVVL 600
  601 TDDKVTTETI SAAFKNLEYY KEYTLSTTMI YDRGNGEETE TLENQNIQLD LKKVELKNIK 660
  661 RTDLIKYENG KETNESLITT IPDDKSNYYL KITSNNQKTT LLAVKNIEET TVNGTPVYKV 720
  721 TAIADNLVSR TADNKFEEEY VHYIEKPKVH EDNVYYNFKE LVEAIQNDPS KEYRLGQSMS 780
  781 ARNVVPNGKS YITKEFTGKL LSSEGKQFAI TELEHPLFNV ITNATINNVN FENVEIERSG 840
  841 QDNIASLANT MKGSSVITNV KITGTLSGRN NVAGFVNNMN DGTRIENVAF FGKLHSTSGN 900
  901 GSHTGGIAGT NYRGIVRKAY VDATITGNKT RASLLVPKVD YGLTLDHLIG TKALLTESVV 960
  961 KGKIDVSNPV EVGAIASKTW PVGTVSNSVS YAKIIRGEEL FGSNDVDDSD YASAHIKDLY1020
 1021 AVEGYSSGNR SFRKSKTFTK LTKEQADAKV TTFNITADKL ESDLSPLAKL NEEKAYSSIQ1080
 1081 DYNAEYNQAY KNLEKLIPFY NKDYIVYQGN KLNKEHHLNT KEVLSVTAMN NNEFITNLDE1140
 1141 ANKIIVHYAD GTKDYFNLSS SSEGLSNVKE YTITDLGIKY TPNIVQKDNT TLVNDIKSIL1200
 1201 ESVELQSQTM YQHLNRLGDY RVNAIKDLYL EESFTDVKEN LTNLITKLVQ NEEHQLNDSP1260
 1261 AARQMIRDKV EKNKAALLLG LTYLNRYYGV KFGDVNIKEL MLFKPDFYGE KVSVLDRLIE1320
 1321 IGSKENNIKG SRTFDAFGQV LAKYTKSGNL DAFLNYNRQL FTNIDNMNDW FIDATEDHVY1380
 1381 IAERASEVEE IKNSKHRAFD NLKRSHLRNT ILPLLNIDKA HLYLISNYNA IAFGSAERLG1440
 1441 KKSLEDIKDI VNKAADGYRN YYDFWYRLAS DNVKQRLLRD AVIPIWEGYN APGGWVEKYG1500
 1501 RYNTDKVYTP LREFFGPMDK YYNYNGTGAY AAIYPNSDDI RTDVKYVHLE MVGEYGISVY1560
 1561 THETTHVNDR AIYLGGFGHR EGTDAEAYAQ GMLQTPVTGS GFDEFGSLGI NMVFKRKNDG1620
 1621 NQWYITDPKT LKTREDINRY MKGYNDTLTL LDEIEAESVI SQQNKDLNSA WFKKIDREYR1680
 1681 DNNKLNQWDK IRNLSQEEKN ELNIQSVNDL VDQQLMTNRN PGNGIYKPEA ISYNDQSPYV1740
 1741 GVRMMTGIYG GNTSKGAPGA VSFKHNAFRL WGYYGYENGF LGYASNKYKQ QSKTDGESVL1800
 1801 SDEYIIKKIS NNTFNTIEEF KKAYFKEVKD KATKGLTTFE VNGSSVSSYD DLLTLFKEAV1860
 1861 KKDAETLKQE ANGNKTVSMN NTVKLKEAVY KKLLQQTNSF KTSIFK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle