YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113884321, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLLDTLMQ TIASYMWPLF RVTSMLMVMV VFGATTTPTR VRLLLAVAIT LAIAPVLPPV  60
   61 KDAELFSLSA VFITAQQIII GVAMGFVTQM VMQTFVLTGQ IIGMQTSLGF ASMVDPGSGQ 120
  121 QTPVIGNFFL LLATLIFLAV DGHLLMIRML VASFETLPIS NQGLTLTSYR ALAEWGSYMF 180
  181 GAALTMSLSA IIALLLVNLS FGVMTRAAPQ LNIFSIGFPI TMIGGLLILW LTLTPVMAHF 240
  241 EEVWASAQLL LCDILGLQCQ ADGIL

Type	Start	End	Confidence
Cytoplasmic	1	16	0.50
Transmembrane Helix	17	36	0.89
Non-Cytoplasmic	37	40	0.45
Transmembrane Helix	41	60	0.83
Cytoplasmic	61	65	0.48
Transmembrane Helix	66	88	0.79
Non-Cytoplasmic	89	93	0.34
Transmembrane Helix	94	114	0.67
Cytoplasmic	115	123	0.40
Transmembrane Helix	124	147	0.85
Non-Cytoplasmic	148	177	0.48
Transmembrane Helix	178	202	0.85
Cytoplasmic	203	210	0.58
Transmembrane Helix	211	234	0.87
Non-Cytoplasmic	235	265	0.55