YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82405330, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHGDEMMKK MTGKSFALSA LVAASFMAAG AMASDKTEPR NEVYKDKFAN QYNSWHDTAK  60
   61 SEEITDALAG DPSLVILWAG YGFAKDYNAP RGHMYAVTDV RNTLRTGAPT NAEDGPMPMA 120
  121 CWSCKSPDVP RLIEEQGEDG YFKGKWAKGG PEVVNTIGCS DCHEKGTPKL RISRPFAERG 180
  181 MEALGTPFDK ASKKDKQSMV CGQCHVEYYF EKKDDRKGFV KFPWDSGTTV EQMEAYYDAI 240
  241 EFSDWTHSLS KTPMLKAQHP GYETWKMGVH GKNDVSCVDC HMPKVTNDKG RKYTDHKVGN 300
  301 PFDRFDETCA TCHSQSKEFL EGITKERYAK VKELKARAEG QLVKAHFEAA KAWEVGATEA 360
  361 EMKPILTDIR HAQWRWDFAI ASHGVAAHAP EEALRILGTA VDKAADARVK LAQLLAKKGV 420
  421 TDAVAIPDIS TKAKAQAALG MDMDKMNAEK EAFKKDMLPK WDAEAKKREA TYK

Type	Start	End	Confidence
Signal Peptide	1	33	0.95
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	473	0.99