YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113885442, gi...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.69
Transmembrane Helix	15	37	0.83
Cytoplasmic	38	43	0.65
Transmembrane Helix	44	62	0.90
Non-Cytoplasmic	63	219	0.87
Transmembrane Helix	220	243	0.87
Cytoplasmic	244	253	0.83
Transmembrane Helix	254	273	0.93
Non-Cytoplasmic	274	278	0.73
Transmembrane Helix	279	298	0.88
Cytoplasmic	299	305	0.85
Transmembrane Helix	306	336	0.82
Non-Cytoplasmic	337	371	0.87
Transmembrane Helix	372	393	0.89
Cytoplasmic	394	400	0.67
Transmembrane Helix	401	421	0.93
Non-Cytoplasmic	422	455	0.86
Transmembrane Helix	456	476	0.93
Cytoplasmic	477	484	0.82
Transmembrane Helix	485	504	0.94
Non-Cytoplasmic	505	773	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGFIFGFSA TLLSAMLWPS LLPISCLPYL CLGALILFKK APSLSGVLFA MCWLTGFCLV  60
   61 LSRQELPLSQ QPIHVRGEII SLVSQNSDWV SFDIIVDKPN LIFVPRAKLR LTWQSSETLQ 120
  121 VGQVWSFTLM PKSISSVLNQ GGYNEQKQLI SQHIVGKGRV LHAKLQTSHF SLRNHLIEQL 180
  181 APKLSTLAQG DILLALILGD KQLISASKWQ DLRQTGTGHL VAISGLHLSV ITAWVYSCIL 240
  241 FLLTRVAAHP SRRNLVIALL LAGASAFFYS YLAGFAVSTQ RALVMILLIM LLSLLRRYSS 300
  301 AWDRLLFALF IVLLVDPLAC LSAGFWLSFC ALAIILYTLE SAPVAQSIEN KATFMVRARI 360
  361 RFAQFWSIQW RLSLVLGLVQ AIFFGGLSVH SLWINMLVVP WFSLIVIPLS MLALIIWWIG 420
  421 TLFGQSWFGF FNLADVTLLP YGKLLELSGD LPAHWYAVSE TLLAGSLCAL LAMILWRYLP 480
  481 HHCRYGLWHL PIALLFIPLI LLILQRITEP SSPKWTLHLL DVGQGLAVVI EQENRALIYD 540
  541 TGAAYGEGFS YSERVIIPFL NRKGVALVDY IVVSHGDNDH AGGAKVLAKA YPSANWITDV 600
  601 AHLGGTPCLP QQIQWLQLKL SFISPPTATG GNNASCVLRI DDGVNSLLLS GDIEKETEAL 660
  661 LIAQSLIGTE LKSKVLIAPH HGSRTSSTPA FIDAVAPELV LFPAGLNNRY GFPKPDVVAR 720
  721 YQARQISYLT TGLEGQISVN FTNGRLEVKT YRRDLAPFWY NRLFRFGDLI NPE