YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|146297489, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRKEKLFGY LFLLPAVLIF IFVAVIPLVQ VFVFSLFDIQ LNNPTKSEVS LSYKIDVENY  60
   61 ANTVFTASSI LDSVSSQSLD SKQKKIVDRI KSLLPELEKS IFNTNEKMSQ LNKVNDLLNN 120
  121 FQPVDIKLKY LSVSRKEINQ YNDYVKKLIS LANSLPNTQE TNDLKQALLA LDQVIVKPNF 180
  181 VGLQNYSYYL KDSRLLSAIK NTLLFTVVTV FFELVFGLML AVVMHKVTSL KNVFKSIVLM 240
  241 PWAIPTVISA LMWKFMYDGQ VGIMSKFFAD IGLIKSPADL LSSTTNAMIA AMTADIWKTT 300
  301 PYIAILLVAG LQTIPESLYE AAKVDGANAV YQFFRITLPM LKPTILVALL FRTLDAFRVF 360
  361 DLIYVLTGGG PANSTETVSI YTYKTLFNQL DFGRGSTLAV LIFIMVTIIS FIYIKILGAE 420
  421 VFSHQKR

Type	Start	End	Confidence
Cytoplasmic	1	7	0.90
Transmembrane Helix	8	31	0.89
Non-Cytoplasmic	32	202	0.89
Transmembrane Helix	203	224	0.94
Cytoplasmic	225	232	0.79
Transmembrane Helix	233	257	0.82
Non-Cytoplasmic	258	298	0.70
Transmembrane Helix	299	314	0.55
Cytoplasmic	315	332	0.61
Transmembrane Helix	333	354	0.57
Non-Cytoplasmic	355	395	0.69
Transmembrane Helix	396	417	0.92
Cytoplasmic	418	427	0.83