YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|146297472, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKSNKMLIK MLSLLLVIVM VVAVLYGCKK SSSSSESEKE KSEETIKVGI LHSLSGTMSI  60
   61 SEVSLKDAEL MAIEEINNNG GVLGKKLEPI VEDGASDWPT FAEKAKKLLQ KDKVAVIFGC 120
  121 WTSASRKAVL PVVEENNGLL FYPVQYEGLE SSPNIFYMGA APNQQIVPAV KWLFDNGKKR 180
  181 FYLLGSDYVF PRTANKIIKA YLKYLGGVVV GEEYTPLGHT DYSSVINKIK AAKPDVVFNT 240
  241 LNGDSNVAFF KQLKDAGIDA NTLPVMSVSI AEEEIKGIGP EYLKGHLVTW NYFQSVDTPE 300
  301 NKEFVEKYKK KYGEDRVTDD PIEAAYIGVY LWAKAVEKAG STDVDKVREA AKGIEFNAPE 360
  361 GPVKIDGDNQ HLYKTVRIGE ILENGQIREL WKTNKPVKPD PYLKGYEWAQ GLSEQ

Type	Start	End	Confidence
Signal Peptide	1	27	0.78
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	415	0.99