YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145411050, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.79
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	27	0.78
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	42	0.94
Transmembrane Helix	43	65	0.89
Cytoplasmic	66	78	0.87
Transmembrane Helix	79	99	0.90
Non-Cytoplasmic	100	121	0.87
Transmembrane Helix	122	144	0.87
Cytoplasmic	145	153	0.80
Transmembrane Helix	154	177	0.89
Non-Cytoplasmic	178	192	0.80
Transmembrane Helix	193	212	0.88
Cytoplasmic	213	225	0.83
Transmembrane Helix	226	247	0.91
Non-Cytoplasmic	248	264	0.91
Transmembrane Helix	265	286	0.91
Cytoplasmic	287	292	0.92
Transmembrane Helix	293	312	0.91
Non-Cytoplasmic	313	317	0.70
Transmembrane Helix	318	337	0.94
Cytoplasmic	338	348	0.84
Transmembrane Helix	349	369	0.93
Non-Cytoplasmic	370	385	0.79
Transmembrane Helix	386	407	0.90
Cytoplasmic	408	445	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRSFKILLG IVLLILALIL GFSTAKADQI TPEKVATAID NVWVLITAFL VFFMQAGFAM  60
   61 VEAGFTRAKN ASNIVMKNLM DFAIGSVIFW LFGFAFMFGK DAGGFIGTSG FFLSDSFKHL 120
  121 GLSIPLTSFL MFQTVFAATA ATIVSGAMAE RTKFIAYCIY SAVISFIIYP VVGHWAWGGG 180
  181 WLSKLGFIDF AGSTVVHSVG GWSALIGAAM LGPRIGKYTK DGKVNAIPGH SITLAALGTF 240
  241 ILWFGWFGFN PGSTLSSMND KIGDIAVNTN LAAAMGANLA MIYTWLKYKK PDVSMTLNGA 300
  301 LAGLVAITAG CASVNAWGAA IIGGLAGILV VVAVEFIDKK LKIDDPVGAI SVHGVCGAFG 360
  361 TLMVGLFATD GGLFYGGGIK QFLVQLAGVA STFIWTTITA FILFAIIKLT VGLRVSEEEE 420
  421 IEGLDVTEHG TAAYGDFVIK SQTVK