YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126355674, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	28	0.93
Non-Cytoplasmic	29	32	0.83
Transmembrane Helix	33	52	0.93
Cytoplasmic	53	61	0.77
Transmembrane Helix	62	83	0.90
Non-Cytoplasmic	84	109	0.94
Transmembrane Helix	110	135	0.87
Cytoplasmic	136	141	0.89
Transmembrane Helix	142	163	0.89
Non-Cytoplasmic	164	182	0.89
Transmembrane Helix	183	205	0.92
Cytoplasmic	206	229	0.90
Transmembrane Helix	230	249	0.93
Non-Cytoplasmic	250	268	0.86
Transmembrane Helix	269	289	0.92
Cytoplasmic	290	305	0.82
Transmembrane Helix	306	327	0.87
Non-Cytoplasmic	328	347	0.71
Transmembrane Helix	348	380	0.75
Cytoplasmic	381	389	0.49
Transmembrane Helix	390	411	0.83
Non-Cytoplasmic	412	427	0.56
Transmembrane Helix	428	449	0.91
Cytoplasmic	450	450	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGLATDTFL LLDALVTIVG LILLITHFKV HPFVALTLAA GFLGLTSGMP VAKVMKSFQD  60
   61 GFGGVLGFVG IVLALGTMLG KLMADSGGAD QIAQTLIRAF GKKNVHWAMM FAAFLVGIPL 120
  121 FFEIGFVLLI PLVFIVARRS GVSLVKIGIP LLAGLSVVHG LVPPHPGPLL AIGIFHADIG 180
  181 KTIFYGLIVA LPTAIIAGPL FGNFISRYIP GNPSQELMDQ IAKESDQGNL PSFSITLITV 240
  241 LLPVALMLLK TFADVVLPAE HIVRQWMDLI GHPITALLAA LLLAFYTFGS ARGFNRQQIM 300
  301 KMLDQSLAPT AAIVLIVGAG GGFKQMLVDT GVGNVIGQMA VQAEISPIML AWLVAAVIRI 360
  361 ATGSATVATI TGAGIVAPVI DLVPGVNREL LVLATGAGSL ILSHVNDAGF WLVKQYFNMT 420
  421 VAETFKTWSM METILSIVGI IFIMLLSLVV