YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP_PSEP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFWTAFQAI ILGVVEGLTE FLPISSTGHQ IIVADLIGFG GERAMAFNII IQLAAILAVV  60
   61 WEFRSKIFEV VFGLTHQPKA RRFTGNLLLA FMPAVVLGVL FADLIHEYLF NPVTVAAALV 120
  121 VGGVIMLWAE RRKHRVEVDH VDDMRWSHAL KIGFIQCLAM IPGTSRSGST IIGGLLFGLS 180
  181 RKAATEFSFF LAMPTMVGAA VYSGYKYRDL FQPGDLPVFA LGFVTSFIFA MIAVRALLKF 240
  241 IANHSYAAFA WYRIVFGLFI LATWQFGWVD WSTAHG

Type	Start	End	Confidence
Cytoplasmic	1	8	0.72
Transmembrane Helix	9	27	0.76
Non-Cytoplasmic	28	43	0.74
Transmembrane Helix	44	63	0.93
Cytoplasmic	64	82	0.93
Transmembrane Helix	83	102	0.96
Non-Cytoplasmic	103	108	0.74
Transmembrane Helix	109	129	0.91
Cytoplasmic	130	183	0.74
Transmembrane Helix	184	205	0.74
Non-Cytoplasmic	206	215	0.70
Transmembrane Helix	216	238	0.90
Cytoplasmic	239	248	0.68
Transmembrane Helix	249	268	0.95
Non-Cytoplasmic	269	276	0.71