YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82713407, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFDFDLFVI GAGSGGVRAA RFAAGFGARV AVAESRYLGG TCVNVGCVPK KLLVYGAHVA  60
   61 DELEQAAGFG WTLEEGHFDW GTLIANKNRE IERLNGIYRN LLVNSGVTLL QGHARLTGAN 120
  121 EVEVDGQRYT AEHILIATGG WPQVPDIPGK ELAITSNEAF YLKDLPRRVL VVGGGYIAVE 180
  181 FAGIFQGLGA DTTLLYRGDL FLRGFDGSVR THLKEELEKR GLDLQFNADI QRIDKLEDGR 240
  241 LKATLKDGRE LVADCVFYAT GRRPMLDNLG LENTGVELDA RGYIRVDEQY QTTAPSILAI 300
  301 GDVIGRVQLT PVALAEGMAV ARRLFKPEQY RPVDYQNIPT AVFSQPPIGT VGLTEEQALE 360
  361 AGHKVQVFES RFRAMKLTLT DIQEKTLMKL VVDAQTDKVL GCHMVGPDAG EIIQGLGIAL 420
  421 KAGATKQQFD ETIGVHPTAA EEFVTMRTVT R

Type	Start	End	Confidence
Signal Peptide	1	19	0.62
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	451	0.98