YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116108317, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.93
Transmembrane Helix	14	36	0.89
Cytoplasmic	37	56	0.87
Transmembrane Helix	57	79	0.91
Non-Cytoplasmic	80	104	0.88
Transmembrane Helix	105	124	0.95
Cytoplasmic	125	133	0.88
Transmembrane Helix	134	154	0.87
Non-Cytoplasmic	155	164	0.80
Transmembrane Helix	165	184	0.92
Cytoplasmic	185	195	0.70
Transmembrane Helix	196	216	0.93
Non-Cytoplasmic	217	221	0.82
Transmembrane Helix	222	241	0.93
Cytoplasmic	242	247	0.78
Transmembrane Helix	248	267	0.94
Non-Cytoplasmic	268	274	0.72
Transmembrane Helix	275	295	0.93
Cytoplasmic	296	321	0.92
Transmembrane Helix	322	345	0.89
Non-Cytoplasmic	346	351	0.80
Transmembrane Helix	352	375	0.89
Cytoplasmic	376	441	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDTLKEIPF ALKFLMVIII TFGISVILTP VMTFVSKVIG AVDKPNERRV NKKPMPSAGG  60
   61 LVIFIAFAVA TLFILPQIVH AQPPIHSQPP GNGNGHHPIQ LVSYLSYIWP FIVGGGIVVL 120
  121 TGLVDDIKEI SPKMKLLGLT IAASFIWFFT NARFDNLKIP FGGPLLIFPG WLSFIFTVFW 180
  181 ILAITNAINL IDGLDGLASG VSIISLTTMG IVSYFFLPSP NVFLPITIFT VVAAIMGFFP 240
  241 YNYHPAIIYL GDTGALFLGF IISVASLQGL KNATAVAVLT PLLILGVPLT DTIMAMIRRK 300
  301 LNRQSIATAD KRHLHHRLMA LGFTHRGAVL VIYGIASIFA FISILLQFSS RIGGILLVIA 360
  361 CLFGLEIFIE LVGILGENRQ PVLKALKFVG NSAYRDEVLH PERTDKRDNK DQEQYSVVDE 420
  421 EVDEPTQEFP IQNYRRSRHK K