YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62424658
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.94
Transmembrane Helix	8	31	0.91
Non-Cytoplasmic	32	51	0.90
Transmembrane Helix	52	71	0.94
Cytoplasmic	72	84	0.74
Transmembrane Helix	85	104	0.92
Non-Cytoplasmic	105	108	0.74
Transmembrane Helix	109	130	0.90
Cytoplasmic	131	138	0.86
Transmembrane Helix	139	158	0.94
Non-Cytoplasmic	159	164	0.75
Transmembrane Helix	165	187	0.90
Cytoplasmic	188	215	0.92
Transmembrane Helix	216	236	0.94
Non-Cytoplasmic	237	244	0.81
Transmembrane Helix	245	265	0.91
Cytoplasmic	266	279	0.77
Transmembrane Helix	280	298	0.94
Non-Cytoplasmic	299	304	0.76
Transmembrane Helix	305	324	0.87
Cytoplasmic	325	329	0.89
Transmembrane Helix	330	353	0.86
Non-Cytoplasmic	354	365	0.77
Transmembrane Helix	366	386	0.95
Cytoplasmic	387	630	0.94
Transmembrane Helix	631	652	0.62
Non-Cytoplasmic	653	918	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAETAAWGA LIVLVAISYV VAGTSGFFAT IGGRAFTAMA DSLAAGGFDN QLGSLSLLIV  60
   61 FVLAGAGLFI PQKILASKGP AVRKLALSIA AVVEAGLLIV LSLAPSAWLT WVTALFLGAV 120
  121 VGLLMSINPF TNEKPWRRVG IPAALLVFVS FSFQIIGGSA AGTQALGWTS LLVGIAMAVG 180
  181 AVIIFLTPER ALHAESATTG AFPSIKARVA RPAANIAMPW VCIALFAVLG TTFILAQPTA 240
  241 VEHSFGQAGF AFMLASCLVG WAIGFEMGPT FAPGMSRPRV SAFALTVSGI LLIATGAINE 300
  301 LSGKVVLAAV IAFLVGIGVR SQPYNFSRRI GAVGGAVVAL ILNALDFGVI IPVGSAMDWA 360
  361 LAPSDVAFAI MGLAALVAGV IGLFIFDPHG LQGLSVDIVH GFRPPSAAEN GANDSIGNSA 420
  421 ERLGAGFFIA IEGGDGSGKS TQIKRVSQIL ADEGYSVEAT REPGGTELGR QIRSVLFDSE 480
  481 PPSPRTEALL FAADRAHHVA SLVDPSLDSG NIVITDRYID STIAYQAAGR NFDPKTILAL 540
  541 SKWATQGLVP HLTIVLDIDP EVSATRMGKR GENNYLDEEN QQFHQRVRQT YLTRAHKEPD 600
  601 RYIVLDASVS EEDLTAEILT AIRTRLPRQM GGASAAPAGT ATAGAVTGAT GASTDTTETS 660
  661 PDAEVVESHP SEEADGAVSE KAREAQSSDS AASSAPADDE DITPEPGVRF VPLTGERFIP 720
  721 ESAGRRESED RNDGVETERV DLGADLRESD EADPTSAQRS PHSSTQRPDQ PSVRASEDAQ 780
  781 AASAEPEAET GVEHETDEEA ATTVLPARGF TPSAAAAQAH DSGDSDDGDD DSDPTDVIET 840
  841 PSSEEAQTRV VKQVETPNQD DSRRDDEDAK TTVLPVRNAR QMSRERLQAQ AEIERQARER 900
  901 LRKQRERNHQ RFNNPEGH