YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82722842, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.78
Transmembrane Helix	12	33	0.87
Non-Cytoplasmic	34	66	0.56
Transmembrane Helix	67	87	0.73
Cytoplasmic	88	93	0.83
Transmembrane Helix	94	116	0.90
Non-Cytoplasmic	117	133	0.77
Transmembrane Helix	134	154	0.94
Cytoplasmic	155	172	0.76
Transmembrane Helix	173	194	0.92
Non-Cytoplasmic	195	200	0.75
Transmembrane Helix	201	222	0.82
Cytoplasmic	223	229	0.68
Transmembrane Helix	230	251	0.66
Non-Cytoplasmic	252	281	0.77
Transmembrane Helix	282	302	0.80
Cytoplasmic	303	311	0.80
Transmembrane Helix	312	330	0.89
Non-Cytoplasmic	331	336	0.64
Transmembrane Helix	337	358	0.75
Cytoplasmic	359	361	0.58
Transmembrane Helix	362	383	0.87
Non-Cytoplasmic	384	390	0.58
Transmembrane Helix	391	413	0.91
Cytoplasmic	414	712	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDKVFGVLQ RVGRSFMLPI AILPVAGLFL GIGESFTNKT MLDTYGITGL IGPGTFVNAL  60
   61 LSVMNDAGNI VFENLPLIFA IGVAIGMSKK EREVAALAAG IAFLIMHASI GAMIKIHGGT 120
  121 EALLSGASTE VLGIISLQMG VFGGIIVGLG TAALHNRYYK IELPQVLSFF GGTRFVPIIC 180
  181 SIVYLIVGIL MFYIWPPVQG AIYKVGNIVL ASSYAGTWVY GLMERLLIPF GLHHVFYLPF 240
  241 WQTAVGGTAQ VGDKVIEGAQ NIFFAELGTP GITHFSVSAT RFMSGKFPLM IFGLPGAALA 300
  301 MYKCAKPEKR KAVGGLLLSA ALTSMLTGIT EPIEFTFLFV APVLYGIHCV LAGLAYMLMH 360
  361 MLGVGVGMTF SGGFIDLFLF GILQGNAKTS WILIVIVGIV YFVVYYLLFT FLIKKLDLKT 420
  421 PGREDSGEVK LYTRSDLEAK KNDQNENADE LSAMICRGLG GKNNISDVDC CVTRLRCTVH 480
  481 NSELVNEGLL KQTGASGIFH KGVGVQIMYG PRVTVIKSNL EDYLVTAPDK EDTGYAIIKK 540
  541 ESEKDTEKGI EKKVQGKVIS TVILNSPLTG EAKDLSEVPD EVFASRIMGD GAVVVPSDGN 600
  601 VIAPADGVIS FVFPSKHALG LTTTDGLELL IHIGIDTVKL DKKAFETYVE EGDKVQAGDK 660
  661 ILSFDLEFIK NNAPSIASPC ICTALNSNQK VRLLKTGDIK AGEALIAVDA FE