YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69949523, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.78
Transmembrane Helix	5	23	0.94
Cytoplasmic	24	29	0.70
Transmembrane Helix	30	50	0.80
Non-Cytoplasmic	51	56	0.76
Transmembrane Helix	57	75	0.93
Cytoplasmic	76	84	0.78
Transmembrane Helix	85	106	0.93
Non-Cytoplasmic	107	111	0.80
Transmembrane Helix	112	133	0.93
Cytoplasmic	134	149	0.85
Transmembrane Helix	150	169	0.93
Non-Cytoplasmic	170	179	0.81
Transmembrane Helix	180	202	0.91
Cytoplasmic	203	213	0.89
Transmembrane Helix	214	232	0.89
Non-Cytoplasmic	233	237	0.56
Transmembrane Helix	238	256	0.85
Cytoplasmic	257	266	0.82
Transmembrane Helix	267	288	0.82
Non-Cytoplasmic	289	294	0.63
Transmembrane Helix	295	314	0.92
Cytoplasmic	315	324	0.81
Transmembrane Helix	325	346	0.90
Non-Cytoplasmic	347	354	0.77
Transmembrane Helix	355	374	0.91
Cytoplasmic	375	650	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHSIFIHIL LMLVIAIVAI ALLRRLGLPA ILAYLLTGVV SGPSGFHWFT QLQMQSVAEL  60
   61 GVVLLMFTLG LEFSVPRLWA MRRTVFGLGS AQMLVTAFVA GGIAMLVGQN LVAAVVIGSA 120
  121 IALSSTAIVL KLLNEQNWLR RRHGELSVSV LLFQDLAVVP LLILMPLLAK GGAEMSFNSI 180
  181 AWGLLTGILA FLGLMSFGKW ILPRIFDEVA RSRSNELFVL STLVVALVTG AFTQWLGLSM 240
  241 ALGAFIAGML LGESQYRRQL EADIRPFRDL LMGLFFISIG MLLDFNLVMQ YWWQVLLILA 300
  301 GVVLTKILIV HGLLKLVGEN TKVSLSTAIS LGQVGEFSFV LLALAVNYQL LDTEVSTVLV 360
  361 AVAVISMSMA PWLIRHSVDI AKKVSGNKLP PKNEPIEIVL PHADESDVVL ILGYGRVGQT 420
  421 IARFLKTEAV PYMVLDLDPT RVTEARAAGE NIHFGDACRM ALLKKMGIRQ ASLVVVTFCE 480
  481 PRQSEECLAV ARKLAPDVKI LVRTRDDANL HELKEAGATQ VIPESLEGSL MLVSQVLFKC 540
  541 GVPLARIIKR LESERRNHYQ YLHGFFSGTE TDFTLDLLHA VSLASGASAV GKTVADIPWQ 600
  601 ALDVELRAVR RKGEEIDPPP PEWILRRNDI LMLVGKPRSI EKAEEYLLQG