YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69949673, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDYEVLRFI WWALIGVLFI GFTVTDGFDM GVGILLPVIG KDDTERRIMI NTIAPHWDGN  60
   61 QVWLVTAGGA LFAAWPMVYA VSFSGFYVAM MLVLFALFLR PVGFDYRSKI EDPRWRKSWD 120
  121 RALFVGSFVP PLIIGVAFGN LLQGVPFNFD EYLRATYHGG LLGLLNPFGL LVGLVSVTMV 180
  181 IMQGSTWLQM KTDGELRVRS AKVSQVCGGL LVVLFGAAGV WLVNGIDGYV ITSALDLAGP 240
  241 SNPTTKTVAV EAGAWLTNYD KYPLTMLFPV LGLLMPILVI FASRLNRSGF AFFFSSLAVA 300
  301 CVILTCGAAM FPFVMPSSLE PNVSLTMWDA TASQMSLKVM TVAAIIFVPT VLSYTIWTYY 360
  361 KMYGRLNREF VENNKSSLY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.56
Transmembrane Helix	9	28	0.88
Non-Cytoplasmic	29	71	0.58
Transmembrane Helix	72	102	0.78
Cytoplasmic	103	121	0.90
Transmembrane Helix	122	142	0.93
Non-Cytoplasmic	143	161	0.87
Transmembrane Helix	162	182	0.89
Cytoplasmic	183	202	0.83
Transmembrane Helix	203	223	0.92
Non-Cytoplasmic	224	261	0.95
Transmembrane Helix	262	282	0.92
Cytoplasmic	283	289	0.84
Transmembrane Helix	290	314	0.90
Non-Cytoplasmic	315	336	0.92
Transmembrane Helix	337	358	0.93
Cytoplasmic	359	379	0.95