YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69949863, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	34	0.92
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	200	0.99
Transmembrane Helix	201	222	0.91
Cytoplasmic	223	229	0.78
Transmembrane Helix	230	250	0.91
Non-Cytoplasmic	251	258	0.80
Transmembrane Helix	259	280	0.91
Cytoplasmic	281	293	0.90
Transmembrane Helix	294	314	0.91
Non-Cytoplasmic	315	320	0.73
Transmembrane Helix	321	343	0.91
Cytoplasmic	344	351	0.90
Transmembrane Helix	352	374	0.91
Non-Cytoplasmic	375	381	0.77
Transmembrane Helix	382	403	0.85
Cytoplasmic	404	641	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPLITHQLQ QQCKYHFRVL IGLFLLLISQ NCWASTLSGV PLRLTSDSIT KIELQDWVYA  60
   61 NQSNDIENLT TLLQRPENSW KKIDTNQPYK IGIKNYWVSF SIFNPNDHLS RIIALDNPLL 120
  121 DSVKIYHLIN GELVSTEVMG DSLPFKQRPL ESNIFLYPVN FEPGDTHTFY LKIDSKGSIS 180
  181 LPLVLWSSND LTRLTETKNL FSGMQIGLLL AICLFSLFIA LASASYSYSY YSGYVLGLTL 240
  241 LTATIHGVSF RYLWPQWPII QQYIFIIIIP LTLGFSLMFT EKVLQLKYHN LKMLRICRIM 300
  301 AVLCFGLTII MPFINYSFAL YFLAFVVLTM STILMAFSLI QAFGGQRNAP LYAIGRMGLM 360
  361 VGCIITGLIY LGLITLSISP QIPVMIGLTF EVITMAAVLA LRYNDERKAK FEIQQQTLEQ 420
  421 AQRLREIREE ALRNEAENSE KLEQMVQERT LELEITLREL NEVNQKLTEQ NTIDSLTGVK 480
  481 NRSAFDRRLI AEGRISRRQQ TPMSLLMIDI DKFKNINDQY GHLSGDYTIK MIANTLCEYV 540
  541 KRPTDLVSRF GGEEFAIILP CTDIEGALLV AEQIRQAISE LTIVHNGHTI PLTVSIGVSE 600
  601 TIIESDEHPM LLLEQADKAL YKAKRSGRNK VCYYPLETDE I