YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69950296, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKLANPAP LGLMGFGMTT ILLNIHNAGY FPIDSMILAM GIFYGGIGQV IVGMMCFMRG  60
   61 DTFGTTAFTS YGLFWLTLVG IILMPNMGIA ASPAHFMGWY LTLWGTFTAF MFVGSLRYPR 120
  121 AKQVVFGSLT ILFFLLAARD FTDNALLGTI AGFEGIFCGA SAIYFAMAQV LNAEYGRTIL 180
  181 PVGELTQSNT QVQPQTAEAE KVTLHSVKA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	29	0.90
Non-Cytoplasmic	30	35	0.82
Transmembrane Helix	36	58	0.91
Cytoplasmic	59	66	0.82
Transmembrane Helix	67	89	0.86
Non-Cytoplasmic	90	95	0.76
Transmembrane Helix	96	116	0.90
Cytoplasmic	117	123	0.79
Transmembrane Helix	124	141	0.90
Non-Cytoplasmic	142	146	0.77
Transmembrane Helix	147	168	0.89
Cytoplasmic	169	209	0.93