YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69951547, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	31	0.86
Non-Cytoplasmic	32	47	0.90
Transmembrane Helix	48	70	0.92
Cytoplasmic	71	89	0.92
Transmembrane Helix	90	111	0.96
Non-Cytoplasmic	112	153	0.94
Transmembrane Helix	154	172	0.95
Cytoplasmic	173	187	0.94
Transmembrane Helix	188	209	0.85
Non-Cytoplasmic	210	225	0.74
Transmembrane Helix	226	246	0.93
Cytoplasmic	247	265	0.87
Transmembrane Helix	266	282	0.55
Non-Cytoplasmic	283	305	0.49
Transmembrane Helix	306	328	0.72
Cytoplasmic	329	334	0.42
Transmembrane Helix	335	364	0.74
Non-Cytoplasmic	365	365	0.28
Transmembrane Helix	366	380	0.45
Cytoplasmic	381	436	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQRKLGLT SKILIGMAAG IILGLLLRNV FPDSLFIKEY ITEGFLHVIG TIFISSLKML  60
   61 VVPLVFISLV CDTSSLSDPS KLGRLGGKTI AFYLFTTAIA LTIAILAAVL IHPGNASLAG 120
  121 NALEYTVKDA PSLSEVLINI VPTNPMQAMS EGNMLQIIIF AVIFGFAISH IGERGTRVAS 180
  181 FFNDLNDVIM RVVTLIMQLA PYGVFALMAK LSLTLGLETF GSVVKYFFLV VAVLFIQGLV 240
  241 VYPTLLKMFS GLSPLMFLRK IRDVQLFAFS TASSNATLPV TIETAEHRMG VDNKIASFTL 300
  301 PLGATLNMDG TAIMQGVATV FIAQVFGIEL SIMDYATVVV TATLASIGTA GVPGVGLIML 360
  361 AMVLNQVGLP VEGIALIIGV DRMLDMIRTA VNVTGDAVAT VIIAKSEGEF NEEVFNDSQA 420
  421 GKAAKSFEEQ VLNAKK