YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83363652, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	371	0.73
Transmembrane Helix	372	393	0.76
Non-Cytoplasmic	394	394	0.41
Transmembrane Helix	395	417	0.81
Cytoplasmic	418	432	0.78
Transmembrane Helix	433	451	0.90
Non-Cytoplasmic	452	477	0.80
Transmembrane Helix	478	498	0.92
Cytoplasmic	499	516	0.84
Transmembrane Helix	517	540	0.88
Non-Cytoplasmic	541	547	0.85
Transmembrane Helix	548	571	0.93
Cytoplasmic	572	590	0.97
Transmembrane Helix	591	612	0.92
Non-Cytoplasmic	613	619	0.67
Transmembrane Helix	620	636	0.93
Cytoplasmic	637	654	0.76
Transmembrane Helix	655	677	0.86
Non-Cytoplasmic	678	693	0.64
Transmembrane Helix	694	723	0.79
Cytoplasmic	724	733	0.51
Transmembrane Helix	734	759	0.81
Non-Cytoplasmic	760	774	0.55
Transmembrane Helix	775	799	0.83
Cytoplasmic	800	807	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGHRQGRL AGHEGRPWHR DRRRRPPGRA PRDGEQADPE AGRSGGPEVP RHQQPQVRGL  60
   61 RRLWRTARAA SPVGALWRAA SGRVRCAGEP ALHDLQPALP RGSEPHQRDQ PHLDLQSGAD 120
  121 QQRPDGRTGR GSRRVRKHAG PVAGVALHGH RRRECPDPGR DRGLGLGRLR QARHAGLPRR 180
  181 RPPHPRGLCR GKLRAGAARC GRRRGCIELI RHAQARPCHR RRLAGDLRRL HSGHRRHGDL 240
  241 PGRLPLPAGP AAGMDRGSLA DGPRGGRLCG SAGRLSQGRA YRGRLLRVAA ARLALPALRH 300
  301 RDETDLRGDA ELSHLRRLPA DRRHAGDDAD RSADLPCFRN LCRAGGGALL LHPADPAHAA 360
  361 GSADLRRARS GARFLMLPVF LTFSALTLIT CGLMIGVAAA LVSIIGGMAL FGDPFGARVP 420
  421 MMISRFAIDR IDNFLLLAVP FFILAGRLMN TGGVTVRLFD FVAVLVQPLR GGLGYANVMA 480
  481 SFVFAGMSGS ATADVVGLGS IEMKAMRSNG YPEGFSAGVT AASSLLGPVI PPSIVLIAYA 540
  541 VQAEQSVATL FLAAIVPGIL LAACFMVWVA LESRRLKLPA GSWPSGREVR IKALHAILPL 600
  601 LTPGIILAGI YGGIFTPTEA AAVAVLYALL LTTFVYREMN WRTFLAELKG TALDTATLMF 660
  661 IIAMTSAFGV IMLRLGLPQA MVGIVVGISE NPTIVMFLML VVWLLVGCFM AQTPAIIILT 720
  721 PILMPIADRF GFDMIHFGIV MAMALTIGLL TPPVGMVLYA LRKVADVPLA ILFRVVMPYI 780
  781 VIAILFISLL ILVPQLVTAL PYAFGMH