YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83747166, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.96
Transmembrane Helix	46	65	0.94
Non-Cytoplasmic	66	70	0.82
Transmembrane Helix	71	91	0.92
Cytoplasmic	92	126	0.97
Transmembrane Helix	127	148	0.91
Non-Cytoplasmic	149	155	0.79
Transmembrane Helix	156	178	0.92
Cytoplasmic	179	198	0.91
Transmembrane Helix	199	221	0.95
Non-Cytoplasmic	222	229	0.78
Transmembrane Helix	230	251	0.91
Cytoplasmic	252	259	0.81
Transmembrane Helix	260	279	0.92
Non-Cytoplasmic	280	293	0.88
Transmembrane Helix	294	315	0.93
Cytoplasmic	316	322	0.88
Transmembrane Helix	323	344	0.90
Non-Cytoplasmic	345	363	0.90
Transmembrane Helix	364	384	0.94
Cytoplasmic	385	400	0.91
Transmembrane Helix	401	424	0.89
Non-Cytoplasmic	425	435	0.80
Transmembrane Helix	436	463	0.69
Cytoplasmic	464	472	0.89
Transmembrane Helix	473	493	0.89
Non-Cytoplasmic	494	502	0.83
Transmembrane Helix	503	525	0.88
Cytoplasmic	526	548	0.90
Transmembrane Helix	549	567	0.96
Non-Cytoplasmic	568	583	0.81
Transmembrane Helix	584	605	0.91
Cytoplasmic	606	611	0.94
Transmembrane Helix	612	633	0.92
Non-Cytoplasmic	634	678	0.92
Transmembrane Helix	679	699	0.95
Cytoplasmic	700	725	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPRRRSRNR FRSAPGTPAG RGEPTPRIQQ LRPRFEETDM SFVRQHLIWL VVAILGAFAF  60
   61 ATVALARGEA VSALWVVVAA VCIYLIAYRY YSRYIADKVL GLDGTRKTPA WRHNDGLDYV 120
  121 PTNKYVLFGH HFAAIAGAGP LVGPVLAAQM GYLPGMLWIL AGVVFAGAVQ DFIVLFISSR 180
  181 RDGRSLGDLV KSEMGTVPGL IALFGAFLIM IIILAVLALI VVKALAGSPW GTFTVAATIP 240
  241 VALFMGLYVR FIRPGRVGEV SIIGFVLLML AIIGGQAVHE SAALAPLFTY DGKALTWMLI 300
  301 GYGFVASVLP VWLLLAPRDY LSTFLKIGTI LALAIGILIV APKMQMPSLT QFAAGNGPVW 360
  361 SGNLFPFLFI TIACGAVSGF HSLISSGTTP KMLENETQAR FIGYGAMLME SFVAIMALVA 420
  421 ASVINPGVYF AMNAPAALVG STADAVAQTL STWGFVVTPD VLLQTAKDVG ENTILARAGG 480
  481 APTLAVGMAH ILHQVVGGQT MMAFWYHFAI LFEALFILTA VDAGTRAGRF MLQDLLGTFV 540
  541 PALKRTESLA ANLIATAVTV ALWGYFLYQG VVDPLGGINT LWPLFGISNQ MLAAIALTLG 600
  601 TCVLVKMKRD RYVWVTLLPT AWLLVCTLTA GWQKLFDPDP KIGFLAHANR FADAIAAGKV 660
  661 LAPAKSMAQM QQIVLNDRID AILCGLFVLV VVSIAWYGLR TVLKARVQAR PTVNETPYEA 720
  721 LGATH