YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83749461, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.75
Transmembrane Helix	8	29	0.88
Cytoplasmic	30	62	0.81
Transmembrane Helix	63	82	0.95
Non-Cytoplasmic	83	134	0.88
Transmembrane Helix	135	157	0.90
Cytoplasmic	158	174	0.86
Transmembrane Helix	175	193	0.93
Non-Cytoplasmic	194	283	0.96
Transmembrane Helix	284	305	0.91
Cytoplasmic	306	311	0.87
Transmembrane Helix	312	332	0.95
Non-Cytoplasmic	333	358	0.92
Transmembrane Helix	359	379	0.91
Cytoplasmic	380	385	0.77
Transmembrane Helix	386	406	0.87
Non-Cytoplasmic	407	411	0.70
Transmembrane Helix	412	431	0.91
Cytoplasmic	432	450	0.85
Transmembrane Helix	451	473	0.91
Non-Cytoplasmic	474	517	0.76
Transmembrane Helix	518	541	0.83
Cytoplasmic	542	555	0.65
Transmembrane Helix	556	579	0.88
Non-Cytoplasmic	580	590	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAFLLQLAI YLVVLLVLAK PLGIYMARVF GDAPSRAHWL RPVERLLYRI AGVDPRAEMG  60
   61 WKYYALAVIA VNVLGALAVY ALQRLQQWLP LNPQGFGAVT PDSSFNTAVS FVTNTNWQGY 120
  121 SGESTMSYLT QMLGLAVQNF LSAATGIAVV IALIRGFARH SAKTIGNFWV DFTRCTLYVL 180
  181 LPLSIIVAVF FVSQGTIQNL EAYKDVTTVT ATTYDNPKTD AQGNPIKDAQ GNPVTEKATT 240
  241 QKQTLPMGPI ASQEAIKMLG TNGGGPFNAN SAHPYENPTA LTNFVQMLSI FLIPAALCFA 300
  301 FGAMVGDRRQ GWAVLAAMTI LFVVLACFEA WSELHANPML AHLGVDQAVG NMEGKETRFG 360
  361 IVASSLFVTI TTAASCGAVN AMHDSLTALG GLVPMFLIQL GEVVFGGVGS GLYGMLVYAI 420
  421 LAVFIAGLMI GRTPEYLGKK IEVFEMKMTS IAILVTPLLV LVGTAVAVLA SGGRAGIFNP 480
  481 GTHGFSEVLY AFSSAANNNG SAFAGLSANT PFYNVALGIV MWLGRFWIIV PVLAMAGTFA 540
  541 AKKRLPVTVG TLPTHGPLFV VLLIGSVLLV GALTYIPALA LGPIAEHLAR