YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71161643, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTESTDRLDS TKLNSVESAS TNIADNKVPI AVSSTHQSID SKTMNHTPKA MYVTSGNSIT  60
   61 PKGKLNKMPK MVANGSRAFI WYLLAIMVLI LDQWTKWLAQ TKLAFNDPVP VIEPFLNWTL 120
  121 AYNYGAAFSF LADAGGWQKW FFSGLAFIMA IFLTVYLIKA PRAAKLLSMG LALMLGGAIG 180
  181 NLIDRLRIGK VVDFIHVHYA DVWNYPIFNV ADIGVCVGVA LIIIDMIFLE SKRNK

Type	Start	End	Confidence
Cytoplasmic	1	77	0.94
Transmembrane Helix	78	95	0.92
Non-Cytoplasmic	96	136	0.92
Transmembrane Helix	137	158	0.90
Cytoplasmic	159	165	0.85
Transmembrane Helix	166	186	0.90
Non-Cytoplasmic	187	206	0.90
Transmembrane Helix	207	229	0.91
Cytoplasmic	230	235	0.97