YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84357726
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.86
Transmembrane Helix	10	30	0.89
Non-Cytoplasmic	31	338	0.63
Transmembrane Helix	339	358	0.91
Cytoplasmic	359	364	0.53
Transmembrane Helix	365	387	0.79
Non-Cytoplasmic	388	390	0.54
Transmembrane Helix	391	410	0.71
Cytoplasmic	411	438	0.89
Transmembrane Helix	439	461	0.89
Non-Cytoplasmic	462	469	0.78
Transmembrane Helix	470	493	0.84
Cytoplasmic	494	537	0.92
Transmembrane Helix	538	559	0.88
Non-Cytoplasmic	560	863	0.59
Transmembrane Helix	864	886	0.89
Cytoplasmic	887	892	0.46
Transmembrane Helix	893	912	0.96
Non-Cytoplasmic	913	919	0.44
Transmembrane Helix	920	938	0.52
Cytoplasmic	939	967	0.85
Transmembrane Helix	968	989	0.90
Non-Cytoplasmic	990	999	0.70
Transmembrane Helix	1000	1023	0.90
Cytoplasmic	1024	1533	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARFFIDRPV FAWVIAIFIM LGGLFAIRAL PVAQYPDIAP PVVSIYATYP GASAQVVEES  60
   61 VTALIEREMN GAPGLLYTSA TSSAGAASLY LTFKQGVNAD LAAVEVQNRL KTVDARLPEP 120
  121 VRRDGIQVEK AADNIQLVVS LTSDDGRMTD VQLGEYASAN VVQALRRVEG VGKVQFWGAE 180
  181 YAMRIWPDPV KLAGHGLTAS DIASAVRAHN ARVTIGDIGR SAVPDSAPIA ATVFADAPLK 240
  241 TPADFGAIAL RAQPDGSALF LRDVARIEFG GNDYNYPSYV NGKVATGMGI KLAPGSNAVS 300
  301 TEKRVRATMD ELSRYFPPGV KYQIPYETSS FVRVSMNKVV TTLIEAGVLV FLVMFLFMQN 360
  361 LRATLIPTLV VPVALAGTFG VMYAAGFSIN VLTMFGMVLA IGILVDDAIV VVENVERLMV 420
  421 EEGLAPYDAT VKAMKQISGA IVGITVVLTS VFVPMAFFGG AVGNIYRQFA LSLAVSIGFS 480
  481 AFLALSLTPA LCATLLKPVS GDHHEKRGFF GGFNRFVARA TQRYATRVGA MLKKPVRWLV 540
  541 VYGALTAAAA LMLTQLPTAF LPDEDQGNFM VMVIRPQGTP LAETMQSVRA VESAIRRDEP 600
  601 TAYTYALGGF NLYGEGPNGG MIFVTLKNWK ERKATRDHVQ SIVARINERF AGTPNTTVFA 660
  661 MNSPALPDLG SSSGFDFRLQ NRGGLDYATF RAAREQLLAA GGKDRALTDL MFAGTQDAPQ 720
  721 LKLDIDRAKA SALGVSMDEI NTTLAVMFGS DYIGDFMHGT QVRRVMVQAD GRHRLDPDDV 780
  781 KKLRVRNARG EMVPLAAFTT LHWTLGPPQL TRYNGYPSFT INGSAAAGHS SGEAMSAIER 840
  841 IAAKLPAGIG YAWSGQSFEE RLSGAQAPML FALSVLVVFL ALAALYESWS IPFAVMLVVP 900
  901 LGVIGAVLGV TLRMMPNDIY FKVGLIATIG LSAKNAILIV EVAKDLVAQR MSLVDAALEA 960
  961 ARLRLRPIVM TSLAFGVGVL PLAFASGAAS GAQMAIGTGV LGGVITATVL AVFLVPLFFV1020
 1021 IVGRLFDVGP RRRGGAQPTT MEARNHDVCA ECTWRAEGTA RAGRRARTRR VCTHAAVRAP1080
 1081 RPSWAWRHMR QSTAARCRVA EPAIAQDAAL LDDWHAYFTD PALQAWIDAA LANNRDLRIA1140
 1141 AGRLEEARAL YGVQRADRMP SVDANLGYER ARQYDPVVRE SAISGLYRAG VGVSAYELDL1200
 1201 FGRVRSLSDA ALADYFATAD AQRTVRIGVI AEVAGAYVSE RSLHEQLALA QRTLDARERM1260
 1261 AALTQRRYAA GTSDAIELRS ADMLVASARA SQAALQREHA QAVRALQLLA GDFARNVPDD1320
 1321 ATALDSLSIA PVAPGAPSQL LERRPDIRQA EARLKAANAN IGAARAAFFP RIALTTDYGS1380
 1381 VSDAFSNLFA AGTSVWTFAP RITLPIFAGG RNRANLDVAH ARKDIAVAEY EKAVQTAFRE1440
 1441 VADAFAARDW IDRQLVAQQD VYAADGARLK LAERRYAGGV ATYLELLDAQ RSTYESGQEL1500
 1501 IRLRQLRLAN AIALYRALGG GWAPATAEAA ASA