YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84363249
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.44
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYSPPPLFK QGPPALARLI FFVALAIALL VSDARFSTLE IVRGVLGTVL YPLQRAALVP  60
   61 RDLFMGAADI AVTSASLRHE NDALRKRNLQ LSTQANQAAV LAQENAHLRA VLELRQHIAT 120
  121 QSTPVEIQYD TTDPFTQKIV IGQGSQQGIQ NGAPVVSEDG VVGQVTRVFP LQAEVTLITD 180
  181 RDLAIPVQVL RTGLRSVIYG TPKGDSLDLR FVPTSADLVV GDELVTSGLD GIYPPGLPVA 240
  241 KVVRVDKLAD TAFARVICAP IAAVRGARQM LVLHYQNDIP PRPDPKPDPT AEKNREGQER 300
  301 REGAPPRANK GGQGRRQREA GRRRAARHAA GVGRGCRSRR AGQARGRIGQ ARRRTGQARS 360
  361 RTTGSAAMNR PQYILQPVNP YFIVFSLAAA FLLNLMPWGH LAGVPDFVAL VLLFWNIHQP 420
  421 RKVGMGVAFA LGILMDVHDA GLLGEHALAY TLLSYGAITI HRRVLWMPIG VQVLYVTPLL 480
  481 VGAQLVPFVI RLMMGAAFSG WQYLVDGFVE AALWPVASHL LLMPQRRPVD PDDTRPI

Type	Start	End	Confidence
Signal Peptide	1	34	0.44
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	380	0.58
Transmembrane Helix	381	415	0.69
Cytoplasmic	416	422	0.53
Transmembrane Helix	423	442	0.65
Non-Cytoplasmic	443	445	0.46
Transmembrane Helix	446	465	0.55
Cytoplasmic	466	470	0.51
Transmembrane Helix	471	494	0.80
Non-Cytoplasmic	495	502	0.52
Transmembrane Helix	503	522	0.68
Cytoplasmic	523	537	0.70