YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67093808, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREPRFTTRP VLIRNGARSS RTVFFGEFHA AFVAGRTARS GRLHPQPDPH GARLAAARRA  60
   61 VPRHYDAAAE PEGAAHPRRP VRRTLCRREA RLRRGARCAR LHHRADRRIR AERRLRADPQ 120
  121 GRQAAVQDAF GVVRPRIRQR DGRDPRRCVQ ARRPRDHHGR PDRDRRHDDG GAQPAAAARR 180
  181 GGRRRRGDHR PAGPWRLDAA AQRRTDGLYR YRIFRPLNAG RRGLPSRLAS VHARFTAWFT 240
  241 FRSEVTMPNF MLFLATSVAI TFAPGPDNLQ VLARGISQGR AAGFVAALGF TAGILFHTTL 300
  301 AALGVAAVLR SSPVAFQILK LAGAAYLVWI GIKALRSQGL ANAHARPPQP LGTIFRQSVI 360
  361 GNLMNPKVTL FFVVFLPQFV DPHGAQSVTL QMFELGALFM LQTAAVFSLF GVGAGMIGTW 420
  421 LKRRPKAGVW LDRIAGATFI AIGIRVALKD

Type	Start	End	Confidence
Non-Cytoplasmic	1	244	0.63
Transmembrane Helix	245	265	0.79
Cytoplasmic	266	281	0.67
Transmembrane Helix	282	306	0.86
Non-Cytoplasmic	307	313	0.66
Transmembrane Helix	314	335	0.80
Cytoplasmic	336	357	0.78
Transmembrane Helix	358	379	0.74
Non-Cytoplasmic	380	397	0.86
Transmembrane Helix	398	421	0.90
Cytoplasmic	422	428	0.94
Transmembrane Helix	429	448	0.83
Non-Cytoplasmic	449	450	0.76