YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116646774, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	25	0.94
Non-Cytoplasmic	26	31	0.67
Transmembrane Helix	32	50	0.94
Cytoplasmic	51	59	0.78
Transmembrane Helix	60	79	0.89
Non-Cytoplasmic	80	105	0.89
Transmembrane Helix	106	129	0.91
Cytoplasmic	130	141	0.77
Transmembrane Helix	142	161	0.95
Non-Cytoplasmic	162	181	0.87
Transmembrane Helix	182	202	0.96
Cytoplasmic	203	233	0.93
Transmembrane Helix	234	255	0.91
Non-Cytoplasmic	256	271	0.83
Transmembrane Helix	272	292	0.89
Cytoplasmic	293	307	0.79
Transmembrane Helix	308	328	0.91
Non-Cytoplasmic	329	356	0.81
Transmembrane Helix	357	383	0.80
Cytoplasmic	384	392	0.60
Transmembrane Helix	393	413	0.79
Non-Cytoplasmic	414	430	0.73
Transmembrane Helix	431	452	0.91
Cytoplasmic	453	453	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVQGSMLL VFTLIAIAAL ILMIARYKIY PFLVLIIVSL GLGLVVGMPM DKIVKSFETG  60
   61 TGGTLGHIAI VVGLGTMLGK MMAESGGAER IATTLIDWFG EKNIHWAMMF VAIIVGLPVF 120
  121 FEVGFVLLIP IAFNVAKRTG KSLLVVGLPM VAGLSVVHGL IPPHPAALLA VQQYGADIGK 180
  181 TIAFGLVVGV PTAIIAGPLF ALMISKFVKL PENNPLASQF VDSRTDGGKR ELPSFGITLF 240
  241 TILLPVVLML VGSWADLVFT PKSLPNNLLR FAGNSDVALL IAVLVSFWTF GAKQGFNRDQ 300
  301 IQKFCGECLA PIAGITLIVG AGGGFGGVLR DSGISQQIVE TAKHAHLSPL LLGWFVAALM 360
  361 RLATGSATVA MTTACGIVAP IAAASGASVR PELLVLATGS GSLIFSHVND GGFWLIKEYF 420
  421 GMTVGQTFKT WSLLETIISV LGLSFTLLLS VVL