YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|118711485, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSVTYAQLN GWLTAFLWPF VRMLALVATA PMVGHAAVPV RVKIGVAAFM ALVVAPTLGA  60
   61 MPDVTVFSAQ GIWILVNQFL IGVAMGFTMQ LVFAAVEAAG DFIGLSMGLG FATFFDPHSS 120
  121 GATPAMGRFL NAVAMLAFLA VDGHLQVFAA LAASFQSLPV SADLLHAPGW RTLAAFGATV 180
  181 FEMGLLLSLP VVVALLIANL ALGILNRAAP QIGMYQIGFP VTLIVGLLLV QLMIPNLVPF 240
  241 VSHLFDMGLD AMGRVLIGWR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.48
Transmembrane Helix	12	38	0.76
Non-Cytoplasmic	39	43	0.36
Transmembrane Helix	44	67	0.81
Cytoplasmic	68	70	0.43
Transmembrane Helix	71	94	0.68
Non-Cytoplasmic	95	97	0.38
Transmembrane Helix	98	115	0.79
Cytoplasmic	116	128	0.64
Transmembrane Helix	129	153	0.79
Non-Cytoplasmic	154	177	0.74
Transmembrane Helix	178	203	0.83
Cytoplasmic	204	211	0.76
Transmembrane Helix	212	235	0.83
Non-Cytoplasmic	236	260	0.61