YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|124871414, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.54
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHAFLRHAA RVAPVLILCL APALAYAQAN GLPAFNASPG PHGGTTYSLS VQTMLLLTML  60
   61 SFLPAMLLMM TSFTRIIIVL SLLRQALGTA TTPPNQVLVG LAMFLTFFVM SPVLDRAYND 120
  121 GYKPFSDGSM PMEQAVQRGV APFKTFMLKQ TRETDLALFA KISKAAPMQG PEDVPLSLLV 180
  181 PAFVTSELKT GFQIGFTVFI PFLIIDMVVA SVLMSMGMMM VSPSTVSLPF KLMLFVLVDG 240
  241 WQLLIGSLAQ SFS

Type	Start	End	Confidence
Signal Peptide	1	27	0.54
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	53	0.85
Transmembrane Helix	54	77	0.83
Cytoplasmic	78	93	0.74
Transmembrane Helix	94	114	0.79
Non-Cytoplasmic	115	193	0.88
Transmembrane Helix	194	217	0.83
Cytoplasmic	218	227	0.67
Transmembrane Helix	228	249	0.80
Non-Cytoplasmic	250	253	0.69