YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116688062, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.62
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVVMSGRRA CRAIAAAALA AAASLVCAPA GAADMNAVNH PGSIASSVTV GSAAPSLGIG  60
   61 AVLQTLVGLA VVIGLVFACA WLARRFGFQP ARRGGPLKVV SSVGLGAKES ATIVEIGDTW 120
  121 LVLGVAPGNV RLLHTLPAGS AAATATATAG SAPADASVGG TSSDAGLPGT FGSRFRDALA 180
  181 GEAAKRLGRG KDR

Type	Start	End	Confidence
Signal Peptide	1	32	0.65
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	60	0.92
Transmembrane Helix	61	83	0.90
Cytoplasmic	84	193	0.88