YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84387729, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNPQMEQPN SSESALETSF FSKVGRVTDV IEESLIAFFL GAMTLLTFAN VVFRYAFNGN  60
   61 ILWALELTVF MFAWMVLVGA SYGVKKHFHI GVDVIINLAP EKLRKVYALI AVTSCLAFSI 120
  121 LLLIGSWNYW YPFATERAWY ETDDIPMPEM LQFLADWLNE GERYEKLPRF IPYMALPIGM 180
  181 AMLTFRFIQI AYQVATGKLD RMIAGHEAEE ELDALKADVL AGSDEDATAV LDSTKQNKAN 240
  241 ESGTKSNDKE D

Type	Start	End	Confidence
Cytoplasmic	1	34	0.96
Transmembrane Helix	35	56	0.90
Non-Cytoplasmic	57	61	0.84
Transmembrane Helix	62	84	0.90
Cytoplasmic	85	105	0.92
Transmembrane Helix	106	125	0.96
Non-Cytoplasmic	126	170	0.93
Transmembrane Helix	171	192	0.84
Cytoplasmic	193	251	0.95