YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84390462, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.89
Transmembrane Helix	15	35	0.90
Non-Cytoplasmic	36	39	0.71
Transmembrane Helix	40	55	0.86
Cytoplasmic	56	64	0.66
Transmembrane Helix	65	85	0.86
Non-Cytoplasmic	86	89	0.71
Transmembrane Helix	90	109	0.89
Cytoplasmic	110	113	0.69
Transmembrane Helix	114	132	0.84
Non-Cytoplasmic	133	138	0.66
Transmembrane Helix	139	162	0.82
Cytoplasmic	163	387	0.92
Transmembrane Helix	388	407	0.64
Non-Cytoplasmic	408	414	0.50
Transmembrane Helix	415	431	0.44
Cytoplasmic	432	436	0.60
Transmembrane Helix	437	458	0.86
Non-Cytoplasmic	459	463	0.53
Transmembrane Helix	464	478	0.46
Cytoplasmic	479	479	0.17
Transmembrane Helix	480	502	0.78
Non-Cytoplasmic	503	511	0.38
Transmembrane Helix	512	531	0.92
Cytoplasmic	532	727	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFSAKLRLY WANKTINYSV LILITLLGVV VPAWYYGQNT LITPLILGVI AAALAESDDS  60
   61 FTGRLKALTL TFICFAVAAF SIEILFDTPW LFAIGLFVST FSFIILGAIG PKYASIAFGS 120
  121 LLVAIYTMLG AHESTNLWFQ PLLLLTGAAW YYFMSMIWQI VWPMQPVQQN LATVFDQIGN 180
  181 YIGSKAELFY PVSDLIPQPH RIIEAKLNAS TVNALNMCKA TLLNRSKRGH IDGPSDRFLN 240
  241 TYFIAQDIHE RVSSTHYRYQ ELAKHFERSD VLFRFKYLLE AQATACKEVA SSLKVGAEYQ 300
  301 HGDKSVLALD ELMSSLNHLN QQNKPEWKSL LNQLDYLFNN LATVEKQLSN ISNPDAEKLE 360
  361 EDVLDDTNPH TLTAMWHKIK ANLNTDSMLF RHAIRMAITL TLGYGIIQGF DIERGYWILL 420
  421 TTLFVCQPNY SATRQKLTAR VIGTVAGLLI GVPLLTFFPS QESQLVFIVI SGVMFFAFRI 480
  481 NNYGFATGFI TLLVLFCFNQ LGEGYAVVLP RLADTFIGCA LAVLAVIYVL PDWQSKRLHK 540
  541 VMADALDSNK NYLAQIIGQY RVGKKDTLNY RIARRSAHNN DANLTAAISS MLVEPGKYRT 600
  601 SEDESFRFLT LNHALLSYIS ALGAHRTRID DEATHKLVLD AHRVIHEHLD ALNDQLYSHQ 660
  661 EQCEVKNAYD PELDKRLSEW REEDESSVRM VLQQLHLIYR MLPELHTLAT KFAVKVKIDK 720
  721 PFETEAS