YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84376661, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYIMAVIFN RLFAGYTLCY QSLYSQFMKQ EYARLVTLAA WAATIIASIL LVVKVAAWWV  60
   61 TGSVSLLASV VDSLLDIAAS VVNLVVVRYS LQPADKEHTF GHGKAESLAA LAQAMFISGS 120
  121 ACFLILNGIE RFFRPHELNS PEIGIYVSLF AIVMTFGLVR FQKHVVSKTG SQAIAADSLH 180
  181 YQSDLYMNAA IMLALALSWF GIGQADSVFA IGIGIYILYS AYQMATEAIQ SLLDRKLPDE 240
  241 ELKQIKETSL SVEGVLGVHQ LRTRRSGPVR FIQLHLELED NIPLIEAHRI SDEVEDKLIS 300
  301 VFPDADVLIH QDPYSVVFGP EKQQKFHSW

Type	Start	End	Confidence
Cytoplasmic	1	34	0.68
Transmembrane Helix	35	58	0.89
Non-Cytoplasmic	59	65	0.75
Transmembrane Helix	66	87	0.69
Cytoplasmic	88	107	0.64
Transmembrane Helix	108	129	0.91
Non-Cytoplasmic	130	142	0.65
Transmembrane Helix	143	162	0.92
Cytoplasmic	163	182	0.66
Transmembrane Helix	183	203	0.74
Non-Cytoplasmic	204	207	0.52
Transmembrane Helix	208	226	0.75
Cytoplasmic	227	329	0.81