YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84393052, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	223	0.99
Transmembrane Helix	224	249	0.84
Cytoplasmic	250	263	0.80
Transmembrane Helix	264	286	0.88
Non-Cytoplasmic	287	295	0.84
Transmembrane Helix	296	318	0.93
Cytoplasmic	319	339	0.90
Transmembrane Helix	340	362	0.91
Non-Cytoplasmic	363	378	0.80
Transmembrane Helix	379	400	0.94
Cytoplasmic	401	413	0.80
Transmembrane Helix	414	430	0.94
Non-Cytoplasmic	431	436	0.71
Transmembrane Helix	437	457	0.88
Cytoplasmic	458	468	0.79
Transmembrane Helix	469	492	0.80
Non-Cytoplasmic	493	621	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLATLLFV CVSLFTQPAW ALFGNDNAEP SFGGNNNGFV PVDQAFPFNY YQQDGKVLLD  60
   61 WQVKEGYYLY QHSLSFTGQN LAIGNVEMED GQPHQDEFFG EVSIYTQPLF VQVPLQSYQD 120
  121 GSQLIVKYQG CADAGFCYPP ETRVIDIEPF TATGSGDVKS SDVQNSGASQ GSSAAAGEAD 180
  181 NSVQPSSPTA DAASNTTQQT NAPVSKEAGL ADKLGDSWWT PLLFLALGVG LAFTPCVLPM 240
  241 YPILTGIVLG GGKLSQGRAL MLSFIYVQGM ALTYTLLGLV VASAGMQFQA AMQHPYVLIA 300
  301 LSVLFVTLAM SMFGVYNLQL PSSIQTWLNN QSNKQQGGNT LGVFAMGAIS GLVCSPCTTA 360
  361 PLSGALLYVA QSGDLLTGAI ALYALAMGMG IPLILVAVFG NKLLPKAGSW MDKVKIVFGF 420
  421 ILLAAPIFLL ERIIPELWAT VLWSGLGFIA FGWLYHSKNA LPFGGWKQSA VGIIAMLGLF 480
  481 ASAQPALNYW FAEKSVVVEQ QIQFARVNTV EELEIQLIEA KKLGKPVMLD FYADWCVACK 540
  541 EFEKYTFHQA DVENKLSDFV LLQADVTRNM PQDIELLKQL QVLGLPTIEF WDGEGNHVPN 600
  601 ARVTGFMPAD VFLKHMQDHQ L