YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84374933, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQNKKLLVM AGGTGGHVFP GLAVAKKLQQ QGWEIRWLGT ADRMEADLVP KHGIEIDFIK  60
   61 VKGLRGQGIS KLIKAPFQII NAILQARQHI KAWQPDVVLG MGGYVSGPGG IAAWLSGIPV 120
  121 VLHEQNAVAG LTNQWLSKIA KKVFQAFPGA FPAAEVVGNP VREDVVGLAE PQQRMAERDG 180
  181 DIRILVMGGS QGAKILNDTL PVTLAQLGAG FTVMHQAGKN NQQQVIEQYK SHSVDNVQVT 240
  241 EFIDDVAQAY EWADLLVCRS GALTVSEVSA AGVGSIFVPF MHKDRQQALN ADHLVECGAA 300
  301 LMIEQPQLTA DKLANTIAQL DRNELKMMAT KARQAAKLDA DVTVAEAIKA LAK

Type	Start	End	Confidence
Signal Peptide	1	25	0.84
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	353	0.98