YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71839290, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.80
Transmembrane Helix	21	45	0.86
Non-Cytoplasmic	46	51	0.65
Transmembrane Helix	52	70	0.87
Cytoplasmic	71	75	0.60
Transmembrane Helix	76	93	0.82
Non-Cytoplasmic	94	99	0.69
Transmembrane Helix	100	121	0.92
Cytoplasmic	122	139	0.88
Transmembrane Helix	140	162	0.90
Non-Cytoplasmic	163	173	0.86
Transmembrane Helix	174	195	0.93
Cytoplasmic	196	211	0.94
Transmembrane Helix	212	238	0.88
Non-Cytoplasmic	239	251	0.71
Transmembrane Helix	252	274	0.86
Cytoplasmic	275	282	0.71
Transmembrane Helix	283	304	0.87
Non-Cytoplasmic	305	859	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAPAKCQRP SRGRQGSTVN VRVTPIQSLG VALAYLVTAL LGFLLAFEQT NATAVWPPAG  60
   61 IALAAFLLLG HRVWPGVFLG AFLANLFVLS PGFSPSMPAF VAAMGTATGN ALAALCGAYL 120
  121 VRRFIPATSP FDSTPDAVRF ILLAAVASPL ISATIGTVSF SLYSGHWLRY GQIWLTWWLG 180
  181 DAVGVLIFAP LFLTWEKRCS LLRDKKRIGE AVALLALLVL VEAVVFLLNI PVGYLIFLIL 240
  241 FWTALRFGQF ETAVTVTLVM LSFLAWTVTG LGPFSVTNLN YSLLFLQSYL GVASISTLLL 300
  301 STLVNARNLV EEALRASEEK FRNIFEKAPI GIFQSSIEGR FTSVNGTLAT MFRYSSPREM 360
  361 IMDARDISRQ LFICPDQRNA IIARARDSLT YVREEIAYRR RDGSEFIANL YMRLLRGATE 420
  421 NEADLEGFVE DITERKRAED SLRVYQENLE NLVRARTSEL QDANERLTRE IEERNRAERI 480
  481 LIEREAQYRD LVESANCVIL RWLPDGRIIF FNRFAQSFFG YREEEVLGRS IIGTLIPPAD 540
  541 STGHELTSLA TDIVSHPEAY AHNINENLRK NGELVWVAWT NKPILAPDGS VAEILSIGID 600
  601 ITQLVHTEQA LRRTLDELAW AKERAESADH LKSAFLATMS HELRTPLNSI IGFTGILLQG 660
  661 LSGPINDEQA KQLGMVKNSA NHLLSLISDV LDISKIEAGQ LKVEHEPFDL RESILKVVQS 720
  721 VRPLAEKKGL DLSCDLAEQV GNISGDARRV EQVLLNLLSN ALKFTEQGGV RVSCGREGDA 780
  781 FLTSVRDSGI GIKDEELERL FKPFHQVDTG LSRKYEGTGL GLSISKKLVE LMGGEIRVES 840
  841 SPGKGSTFAF TLPLERNPV