YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84513385, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHLAFFKWT EGQVPLELSI NNLCASFLEL SSINKPFRKR RRRNQAHADL SKNSFRRINE  60
   61 INFIRRLQRA VRWLLPGLVV KRWMFTSGIG LIIALLGAAI WADLNPIYWA VERLFWFLEG 120
  121 ITTFLPRSFT GPIVFLIGIG LLLWGQSRSF DSIQKAVAPD KDAVLVDALM VKSKLNRGPN 180
  181 IVAIGGGTGL ASLLQGLKRY SSRITAIVTV ADDGGSSGIL RRELGVQPPG DIRNCLAALS 240
  241 NEEPLLTRLF QYRFSSGTGL AGHSFGNLFL SALTSITGNI DTAITASSRI LSVQGQVVPA 300
  301 TNADVCLWAE LENGEVVEGE SSIGRASSPI VRIGCYPEKP PAISRALDAI ENAELILLGP 360
  361 GSLYTSLLPN LLVPEIVAAI QKSKAPKLYI CNLMTQPGET DGLDVAGHIR AIEAQLASLG 420
  421 ITNRIFNEIL VQEALAPSPL IEYYRSRGAE PVKCDRNSLL SKGYRVYQAS LQGSKATPTL 480
  481 RHDPRSLSLA VMRFYRKYKR KN

Type	Start	End	Confidence
Cytoplasmic	1	81	0.81
Transmembrane Helix	82	102	0.94
Non-Cytoplasmic	103	123	0.91
Transmembrane Helix	124	145	0.94
Cytoplasmic	146	177	0.96
Transmembrane Helix	178	197	0.52
Non-Cytoplasmic	198	502	0.71