YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84683937, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	374	0.98
Transmembrane Helix	375	396	0.85
Cytoplasmic	397	398	0.45
Transmembrane Helix	399	418	0.49
Non-Cytoplasmic	419	421	0.43
Transmembrane Helix	422	443	0.86
Cytoplasmic	444	455	0.39
Transmembrane Helix	456	473	0.58
Non-Cytoplasmic	474	501	0.76
Transmembrane Helix	502	524	0.92
Cytoplasmic	525	554	0.61
Transmembrane Helix	555	578	0.87
Non-Cytoplasmic	579	585	0.50
Transmembrane Helix	586	613	0.77
Cytoplasmic	614	624	0.41
Transmembrane Helix	625	644	0.85
Non-Cytoplasmic	645	659	0.46

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRLVVVVL ALVCLGTQIV AQDTQNGDTE TGTDLGPMQQ VLQANAEIIV ESSRRTIQPA  60
   61 IDAVANSGLE AAPFVLGTWQ DRDMWQRVSD GLFFKVEKSG SDYELTDFDT GEVLARVTKD 120
  121 DIEQIKPNSG IRGLIATALV TFQLNDPDPA KRREALDSLE RNANADLLGP LRDSIETEDN 180
  181 PTIRARKERL EKLITITYGD DPEARIAAIE AMAGDLGVDV RAALNPLVAT RTRAFDGEVP 240
  241 ESVNVAKILR PGTDDLSRED AYALTDGEPL LTDDALRGVL QANIVDGQVG GIPVAELSDP 300
  301 ARRIAAFEAL EAAGTVPAAA TEADVDAAIA TKVFASVYAE PNPDITAAAN RALGRIETKV 360
  361 GLNQVLDLGL DALSLASIYF LAAIGLAITF GVMGVINMAH GEFIMMGAYT GYVVQQIIPN 420
  421 HTTSIIVAIP LAFAVTFAAG VAMERLVIRW LYNRPLETLL ATFGISIALQ QLAKNIFGTQ 480
  481 ARPLTSPDWL GGAWVLNDVV SISTVRIAIF VLALIFLAVF LFIMKRTRLG LETRAVTQNP 540
  541 GMAGAMGINP GRVNMLTFGL GSGIAGIAGV AIGLYAQVTS EIGQAYIVQS FMTVVVGGVG 600
  601 NIWGTLLGAG LIGSLHKGIE WFNPSNTLAA QTYMIIFIII FIQFRPRGII ALKGRAAGD