YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84684431, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.86
Transmembrane Helix	7	33	0.86
Non-Cytoplasmic	34	51	0.83
Transmembrane Helix	52	75	0.84
Cytoplasmic	76	86	0.61
Transmembrane Helix	87	108	0.85
Non-Cytoplasmic	109	111	0.54
Transmembrane Helix	112	132	0.80
Cytoplasmic	133	138	0.82
Transmembrane Helix	139	161	0.89
Non-Cytoplasmic	162	171	0.82
Transmembrane Helix	172	194	0.93
Cytoplasmic	195	216	0.87
Transmembrane Helix	217	234	0.97
Non-Cytoplasmic	235	241	0.63
Transmembrane Helix	242	263	0.88
Cytoplasmic	264	303	0.95
Transmembrane Helix	304	325	0.86
Non-Cytoplasmic	326	336	0.81
Transmembrane Helix	337	358	0.89
Cytoplasmic	359	366	0.72
Transmembrane Helix	367	385	0.90
Non-Cytoplasmic	386	399	0.60
Transmembrane Helix	400	420	0.83
Cytoplasmic	421	428	0.75
Transmembrane Helix	429	449	0.92
Non-Cytoplasmic	450	465	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVALLFVLI IGLLLIGVPI AIALGFSSVL FLLVFSETSL ASVAQSFYQA MAGHYTLLAI  60
   61 PFFILASSFM STGGVAQRII RFAIAVVGHF RGGLAIAGVF ACMLFAALSG SSPATVVAIG 120
  121 SIVIAAMRQQ GYTKDFAAGV IANAGTLGIL IPPSIVMVVY ASSVEVSVGR MFLAGVIPGI 180
  181 LAGLMLMIAI YVIARIRNMP AGSFAGWREI YMSFRDAIWG LLLIVIIMVG IYGIPGITGA 240
  241 IFTPTEAAAV ASIYAFIVAT FIYRDMGPLA EKNNDGVKKS LLSKPQAIIT SLWHRDTRDT 300
  301 LFEAGKLTIT LMFIIANALI LKHVLTDEQI PQQIANAMLS AGFGKIMFLI IVNLILLIGG 360
  361 QFMEPSGLIV IVAPLVFPIA IELGVDPIHL GIIMVVNMEI GMITPPVGLN LFVTSGVAGM 420
  421 PMMKVVRAAL PFLAILFVFL IMVTYIPIIS TWLPTLMMGP EIITN