YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84704005, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNASLRYTRV ARALHWTIAV VIILMFVGGK FMTHLPLGVD LKYIAFQNHK TLGLIVLVLS  60
   61 FVRLWWRLGH PPPPLPDKMA RWEREVARIT HIVFYGFMIG VPLLGWAMVS ADPAGIPTKL 120
  121 FFLIPIPDLP VPEGAGIRAI LQNAHGAMAT AMIALVVLHV GAALKHHYVS QDGTLLRMLT 180
  181 GRSEVTGRRA VPALTAGLVG VALTYLTVML VWGNEDDAVT LPPQQDAEMG SGAGPRAGEA 240
  241 RGPHAWRVDM AASHVRVAAT AYGDEYQAEI PGVYAEIRLD PADPGAVGTI RARLDMTSLE 300
  301 GGSRSVTSEL VKPKWFDIEH YPEARFVSET VRSLPSGDYE AEGVLTVKDQ SVPLTLPFTL 360
  361 SIEGDRAVAI ADVTLNRLDL GLGAPGGGIA EEVAITVHLE ADRAN

Type	Start	End	Confidence
Cytoplasmic	1	12	0.95
Transmembrane Helix	13	34	0.90
Non-Cytoplasmic	35	48	0.84
Transmembrane Helix	49	66	0.95
Cytoplasmic	67	86	0.92
Transmembrane Helix	87	109	0.90
Non-Cytoplasmic	110	145	0.92
Transmembrane Helix	146	169	0.87
Cytoplasmic	170	189	0.93
Transmembrane Helix	190	213	0.89
Non-Cytoplasmic	214	405	0.95