YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115360809, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRANRLLSA CVLGVGFLFL YVPIASLVVY SFNASKLVTV WSGFSFRWYG VLLHDGELLT  60
   61 AAWLSLKIAV LTATASVAIG TWAGFVLARM GRFRGFTLYA AMINAPLVIP EVIQGISLLL 120
  121 LFVAMQQTFG WPAGRGWLTI WIGHVMLCLS FVAVIVQSRV KELDRSIEEA ALDLGARPLK 180
  181 VFFVITLPLI AQALVSGWLL AFTVSIDDVI LSAFLSGPGS TTLPLVVFSR VRLGLNPEMN 240
  241 ALATVFITVV TIGVVVVNRS MLARERRQAR DARAWHAACA PDAPSAPTVS PPARASAVHA 300
  301 RRDPAPHPVK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.83
Transmembrane Helix	10	32	0.89
Non-Cytoplasmic	33	63	0.90
Transmembrane Helix	64	86	0.89
Cytoplasmic	87	99	0.76
Transmembrane Helix	100	124	0.81
Non-Cytoplasmic	125	136	0.85
Transmembrane Helix	137	158	0.91
Cytoplasmic	159	180	0.89
Transmembrane Helix	181	202	0.93
Non-Cytoplasmic	203	240	0.68
Transmembrane Helix	241	262	0.89
Cytoplasmic	263	310	0.68