YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115359629, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	27	0.93
Non-Cytoplasmic	28	32	0.85
Transmembrane Helix	33	53	0.93
Cytoplasmic	54	87	0.98
Transmembrane Helix	88	109	0.92
Non-Cytoplasmic	110	116	0.80
Transmembrane Helix	117	139	0.93
Cytoplasmic	140	159	0.89
Transmembrane Helix	160	182	0.95
Non-Cytoplasmic	183	190	0.81
Transmembrane Helix	191	210	0.95
Cytoplasmic	211	220	0.71
Transmembrane Helix	221	239	0.94
Non-Cytoplasmic	240	255	0.89
Transmembrane Helix	256	277	0.92
Cytoplasmic	278	283	0.92
Transmembrane Helix	284	305	0.90
Non-Cytoplasmic	306	324	0.91
Transmembrane Helix	325	345	0.94
Cytoplasmic	346	361	0.90
Transmembrane Helix	362	385	0.87
Non-Cytoplasmic	386	396	0.70
Transmembrane Helix	397	418	0.73
Cytoplasmic	419	433	0.75
Transmembrane Helix	434	454	0.82
Non-Cytoplasmic	455	463	0.81
Transmembrane Helix	464	486	0.88
Cytoplasmic	487	509	0.90
Transmembrane Helix	510	528	0.96
Non-Cytoplasmic	529	544	0.82
Transmembrane Helix	545	566	0.92
Cytoplasmic	567	572	0.94
Transmembrane Helix	573	594	0.92
Non-Cytoplasmic	595	641	0.95
Transmembrane Helix	642	664	0.91
Cytoplasmic	665	692	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRASSTLLW IAVALLGAFA FGTIALGHGE RVSALWIVIA AVCVYLIAYR FYSRFIASKV  60
   61 MQLDGLRMTP AVKYNDGLDY VPTNKYVLFG HHFAAIAGAG PLVGPVLAAQ MGYTPGMLWI 120
  121 LAGVVFAGAV QDFIVLFIST RRDGRSLGDL VKMELGTVPG VIALFGAFLI MVIILAVLAL 180
  181 IVVKALTNSP WGTFTVAATI PIALFMGIYT RYIRPGRIGE VSIIGFVLLM ASIAFGQHVH 240
  241 DSATLAAWFT FNGTQLTWIL IGYGFVASVL PVWLLLAPRD YLSTFLKIGT ILGLAIGILV 300
  301 VAPELKMPAL TKFVDGTGPV WSGNLFPFLF ITIACGAVSG FHALISSGTT PKLIDNESNA 360
  361 RFIGYGAMLM ESFVAIMALV AACVIEPGIY FAMNAPAAVL GSTPEAVANT VTQWGFVLTP 420
  421 DMLTQTAKAV GETTIIARAG GAPTLAVGMA HILHQVIGGE AMMAFWYHFA ILFEALFILT 480
  481 AVDAGTRAGR FMLQDLLGTF HPALKRTESL PANLVATALC VAAWGYFLYQ GVVDPLGGIN 540
  541 TLWPLFGISN QMLAAIALVL GTVVLFKMKR ERYAWVTIVP TAWLLICTLT AGWQKIFDSN 600
  601 PKVSFLAHAA KLQAAVDEGK VLAPAKSIAQ MQRIIFNDYI DAALAGLFIF VVVAIAVYGL 660
  661 LAVLRARRES KPTVRETPYE AMPAAQALGS GR