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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|75194520, gi|...
Protein type: Transmembrane
Type Confidence: 0.58
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRYKTDHKQ PRFRYSVLAR CVAWANISVQ VLFPLAVTFT PVMAARAQHA VQPRLSMGNT  60
   61 TVTADNNVEK NVASFAANAG TFLSSQPDSD ATRNFITGMA TAKANQEIQE WLGKYGTARV 120
  121 KLNVDKDFSL KDSSLEMLYP IYDTPTNMLF TQGAIHRTDD RTQSNIGFGW RHFSGNDWMA 180
  181 GVNTFIDHDL SRSHTRIGVG AEYWRDYLKL SANGYIRASG WKKSPDIEDY QERPANGWDI 240
  241 RAEGYLPAWP QLGASLMYEQ YYGDEVGLFG KDKRQKDPHA ISAEVTYTPV PLLTLSAGHK 300
  301 QGKSGENDTR FGLEVNYRIG EPLEKQLDTD SIRERRMLAG SRYDLVERNN NIVLEYRKSE 360
  361 VIRIALPERI EGKGGQTLSL GLVVSKATHG LKNVQWEAPS LLAEGGKITG QGSQWQVTLP 420
  421 AYRPGKDNYY AISAVAYDNK GNASKRVQTE VVITGAGMSA DRTALTLDGQ SRIQMLANGN 480
  481 EQRPLVLSLR DAEGQPVTGM KDQIKTELTF KPAGNIVTRT LKATKSQAKP TLGEFTETEA 540
  541 GVYQSVFTTG TQSGEATITV SVDGMSKTVT AELRATMMDV ANSTLSANEP SGDVVADGQQ 600
  601 AYTLTLTAVD TDGNPVTGEA SRLRFVPQDT NGVTIGTISE IKPGVYSATV SSTRAGNVVV 660
  661 RAFSEQYQLG TLQQTLKFVA GPLDAAHSSI TLNPDKPVVG GTVTAIWTAK DANDNPVTGL 720
  721 NPDAPSLSGA AAAGSTASGW TDNGDGTWTA QISLGTTAGE LEVIPKLNGQ DAAANAAKVT 780
  781 VVADALSSNQ SKVSVAEDHV KAGESTTVTL IAKDAHGNAI SGLSLSASLT GAASEGATVS 840
  841 GWTEKGDGSY VATLTTGGKT GELLVMPLFN GQPAATEAAQ LTVIAGEMSS ANSTLVADNK 900
  901 APTVKTTTKL TFTVKDAYGN LVTGLKPDAP QFSGAASTGT ERPSTGDWTE TSNGVYVATL 960
  961 TLGSAAGQLS VMPRVNGQNA VAQPLVLNVA GDASKAEIRD MTVKVDNQLA NGQSTNQVTL1020
 1021 TVVDTYGNPL QGQNVTLTLP KGVTSKTGNT VTTDAAGKAD IELMSTVAGE HSITASVNNA1080
 1081 QKTVTVKFKA DFSTGQASLE VDSAAPKVAN GKDAFTLTAT VEDKNGNPVP GSLVTFNLPR1140
 1141 GVKPLTGDNV WVKANDEGKA ELQVVSVTAG TYEITASAGN SQPSDTQTIT FVADKATATV1200
 1201 SGIEVIGNYA LADGKAKQTY KVTVTDANNN LVKDSDVTLT ASPASLNLEP NGTATTNEQG1260
 1261 QAIFTATTTV AATYTLKAQV SQTNGQVSTK TAESKFVADD KNAVLTASSD MQSLVADGKS1320
 1321 TAKLEVTLMS ANNPVGGNMW VDIQTPEGVT EKDYQFLPSK NDHFVSGKIT RKFSTSKPGV1380
 1381 YTFTFNALTY GGYEMKPVTV TITAVDADTA KDEEAMK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle