YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75230111, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDENFFKKA AAHGEEPPLT PQNEHQRSGL RFARRVRLPR AVGLAGMFLP IASTLVSHPP  60
   61 PGWWWLVLVG WAFVWPHLAW QIASRAVDPL SREIYNLKTD AVLAGMWVGV MGVNVLPSTA 120
  121 MLMIMCLNLM GAGGPRLFVA GLVLMVVSCL VTLELTGITV SFNSAPLEWW LSLPIIVVYP 180
  181 LLFGWVSYQT ATKLAEHKRR LQVMSTRDGM TGVYNRRHWE TMLRNEFDNC RRHNRDATLL 240
  241 IIDIDHFKSI NDTWGHDVGD EAIVALTRQL QITLRGSDVI GRFGGDEFAV IMSGTPAESA 300
  301 ITAMLRVREG LNTLRLPNTP QVTLRISVGV APLNPQMSHY REWLKSADLA LYKAKKAGRN 360
  361 RTEVAA

Type	Start	End	Confidence
Cytoplasmic	1	35	0.99
Transmembrane Helix	36	56	0.88
Non-Cytoplasmic	57	62	0.67
Transmembrane Helix	63	83	0.69
Cytoplasmic	84	102	0.63
Transmembrane Helix	103	127	0.84
Non-Cytoplasmic	128	136	0.55
Transmembrane Helix	137	160	0.86
Cytoplasmic	161	168	0.55
Transmembrane Helix	169	188	0.92
Non-Cytoplasmic	189	366	0.64